Schedule overview
-----------------

- Lecture: Tuesdays, Thursdays 12noon–1:15 pm EST
- Lectures are recorded and posted on `Blackboard <https://blackboard.jhu.edu/webapps/blackboard/content/listContentEditable.jsp?content_id=_10855302_1&course_id=_250971_1&mode=reset>`_
- Instructor & TA office hours by appointment
- Attendance is required. However, if you are sick or have potentially been exposed to COVID19, you may join via Zoom. However, you must authenticate via Hopkins SSO first. Zoom link is on Blackboard.

----

Homework and final project due dates
------------------------------------

- :doc:`homework/HW_01` due 11:59 pm EST, **Sunday Feb 13th**
- :doc:`homework/HW_02`: due 11:59 pm EST, March 1st
- :doc:`homework/HW_03`: due 11:59 pm EST, March 9th
- :doc:`homework/HW_04`: due 11:59 pm EST, March 18th
- :doc:`homework/HW_05`: due 11:59 pm EST, April 1st
- :doc:`homework/HW_06`: due 11:59 pm EST, April 8th
- :doc:`homework/HW_07`: due 11:59 pm EST, April 22nd
- :ref:`Homework 8<Homework 8>`: due 11:59pm EST, May 10th
- :doc:`homework/Final_project`: due 11:59 pm EST, Apr 25

----

Lecture schedule
----------------

The schedule below is tentative. We will keep you updated as the content and schedule evolves. Note that there will be no class on Mar 22 or Mar 24 for Spring break.

#. Jan 25: :doc:`day/01_history_of_stem_cells`
#. Jan 27: :doc:`day/02_introduction_to_python_part_1`
#. Feb 1: :doc:`day/03_introduction_to_python_part_2`
#. Feb 3: :doc:`day/04_Till_McCulloch`
#. Feb 8: :doc:`day/05_scRNAseq_data_generation`
#. Feb 10: :doc:`day/06_scRNAseq_analysis`
#. Feb 15: :doc:`day/07_scRNAseq_analysis_part_2`
#. Feb 17: :doc:`day/08_cell_identity`
#. Feb 22: :doc:`day/09_trajectory_inference`
#. Feb 24: Free
#. Mar 1: :doc:`day/10_TI_part_2`
#. Mar 3: :doc:`day/11_stemness`
#. Mar 8: :doc:`day/12_RNA_velocity` (Guest speaker: Kathleen Noller)
#. Mar 10: :doc:`day/13_scvelo`
#. Mar 15: :doc:`day/14_Lineage_tracing` (Guest speaker: Ray Cheng)
#. Mar 17: :doc:`day/15_Pluripotency`
#. Mar 29: :doc:`day/16_Spatial_Cell-to-Cell`
#. Mar 31: :doc:`day/17_Lineage_Tracing_Analysis`
#. Apr 5: :doc:`day/18_Gene_regulatory_networks` (Guest speaker: Emily Su)
#. Apr 7: :doc:`day/19_Cell_fate_engineering`
#. Apr 12: :doc:`day/20_Simulators` (Guest speaker: Dan Peng)
#. Apr 14: :doc:`21_Simulation_analysis` (Guest speaker: Eric Kernfeld)
#. Apr 19: :doc:`22_Controversies`
#. Apr 21: :doc:`23_ATACseq`
#. Apr 26: Final project presentations
#. Apr 28: Final project presentations

----