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Lectures

The topics that we cover can be broadly split into three categories: stem cell biology, single cell data generation platforms, and computational methods for analyses of these data.

Access to lecture videos is available to current students

The lecture videos below can only be viewed after authenticating via Hopkin's SSO

Lecture Date Topic link to video lecture slides
1 01-21-25 Course introduction intro to course slides
2 01-23-25 Stem cell biology stem cell basics slides
2 01-23-25 Single cell biology game show video NA
3 01-28-25 scRNAseq data generation dropseq slides
4 01-30-25 Scanpy tutorial scanpy analysis notebook
5 02-04-25 Data integration and cell typing hcl,scmap,bbknn,scn slides
6 02-06-25 Integration & typing tutorial cell typing and integration notebook
7 02-11-25 Trajectory inference and pseudotime theory TI slides
8 02-13-25 TI tutorial video notebook
9 02-18-25 Fate potency and stemness (pre-recorded) video slides
10 02-20-25 How-to infer fate potency (pre-recorded) video notebook
11 02-25-25 Gene regulatory networks video slides
12 02-27-25 scGRN video slides
13 03-04-25 Computational approaches to cell fate engineering video slides
14 03-06-25 Simulating single cell trajectories video slides
15 03-11-25 Intro to ST and Cell-to-cell communications video slides
16 03-13-25 Machine Learning for Spatial and Network Biology (In Malone 228; Uhtsav Chitra) - -
-- 03-18-25 Spring break - -
-- 03-20-25 Spring break - -
17 03-25-25 Early development and signaling video slides
18 03-27-25 Till and McCulloch video slides