Schedule overview¶
Lecture: Tuesdays, Thursdays 12noon–1:15 pm EST
Lectures are recorded and posted on Blackboard
Instructor & TA office hours by appointment
Attendance is required. However, if you are sick or have potentially been exposed to COVID19, you may join via Zoom. However, you must authenticate via Hopkins SSO first. Zoom link is on Blackboard.
Homework and final project due dates¶
Homework #1 due 11:59 pm EST, Sunday Feb 13th
Homework #2: due 11:59 pm EST, March 1st
Homework #3: due 11:59 pm EST, March 9th
Homework #4: due 11:59 pm EST, March 18th
Homework #5: due 11:59 pm EST, April 1st
Homework #6: due 11:59 pm EST, April 8th
Homework #7: due 11:59 pm EST, April 22nd
Homework 8: due 11:59pm EST, May 10th
Final project: due 11:59 pm EST, Apr 25
Lecture schedule¶
The schedule below is tentative. We will keep you updated as the content and schedule evolves. Note that there will be no class on Mar 22 or Mar 24 for Spring break.
Jan 25: History of Stem Cells
Feb 3: Till and McCulloch
Feb 8: scRNAseq data generation
Feb 10: scRNAseq analysis
Feb 15: scRNAseq analysis part 2
Feb 17: Cell identity
Feb 22: Trajectory inference
Feb 24: Free
Mar 1: How to do TI analysis
Mar 8: RNA Velocity (Guest speaker: Kathleen Noller)
Mar 10: RNA velocity analysis
Mar 15: Lineage tracing (Guest speaker: Ray Cheng)
Mar 17: Pluripotency
Mar 29: Spatial transcriptomics & Cell-to-cell communication
Mar 31: Lineage Tracing Analysis
Apr 5: Gene regulatory networks (Guest speaker: Emily Su)
Apr 7: Cell fate engineering
Apr 12: Simulators (Guest speaker: Dan Peng)
Apr 14: 21_Simulation_analysis (Guest speaker: Eric Kernfeld)
Apr 19: 22_Controversies
Apr 21: 23_ATACseq
Apr 26: Final project presentations
Apr 28: Final project presentations