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Schedule

  • Schedule overview
  • Homework and final project due dates
  • Lecture schedule

Lectures:

  • History of Stem Cells
  • Comp Lesson 1: Introduction to Python
  • Comp Lesson 2: Introduction to Python
  • Till and McCulloch
  • scRNAseq data generation
  • scRNAseq analysis
  • scRNAseq analysis part 2
  • Cell identity
  • Trajectory inference
  • How to do TI analysis
  • How to do ‘Stemness’ analysis
  • RNA Velocity
  • RNA velocity analysis
  • Lineage tracing
  • Pluripotency
  • Spatial transcriptomics & Cell-to-cell communication
  • Lineage Tracing Analysis
  • Gene regulatory networks
  • Cell fate engineering
  • Simulators
  • Simulation analysis
  • Controversies
  • ATACseq

Homework

  • Homework #1
  • Homework #2
  • Homework #3
  • Homework #4
  • Homework #5
  • Homework #6
  • Homework #7
  • Final project
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